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Cancer Somatic Mutation Analysis - MAFTOOLS R Package
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- 1 Intro
- 2 intro to R
- 3 Installation of Package
- 4 Importing MAF manually
- 5 Importing from TCGA
- 6 Merging MAF
- 7 Plot maf summary
- 8 Oncoplot
- 9 Transition and Transversion plot
- 10 Lollipop
- 11 Rainfall plot
- 12 Comparing mutation to other TCGA
- 13 Plotting VAF
- 14 Copy number variation
- 15 Oncoplot Copy number variation
- 16 Circular binary segmentation
- 17 Somatic interaction
- 18 Detecting Cancer Driver
- 19 detecting pfam domain
- 20 Survival Analysis
- 21 Comparing two cancer cohort
- 22 Forest plot
- 23 Clinical data analysis
