Bioinformagician Courses

WGS Variant Calling - Variant Calling with GATK - Part 1 - Detailed NGS Analysis Workflow

1 review

Learn to call variants from whole genome sequencing data using GATK best practice workflow in less than an hour with Bioinformagician. Includes detailed tutorials and code.

• YouTube
• 48 minutes
• On-Demand
• Free Online Course

Understanding File Formats in Bioinformatics - VCF and gVCF

1 review

Learn to analyze VCF files in bioinformatics, understand genotypes, calculate alternate allele frequency, and distinguish between VCF and gVCF files in under an hour with Bioinformagician.

• YouTube
• 26 minutes
• On-Demand
• Free Online Course

WGS Variant Calling - Variant Filtering and Annotation - Part 2 - Detailed NGS Analysis Workflow

Learn to filter and annotate genetic variants using GATK's Funcotator tool in this detailed tutorial by Bioinformagician. Less than 1-hour workload.

• YouTube
• 43 minutes
• On-Demand
• Free Online Course

Weighted Gene Co-expression Network Analysis - Step-by-Step Tutorial - Part 1

Heatmaps This course covers the workflow steps for WGCNA, teaching how to get and manipulate data, detect outliers, normalize, filter and identify modules, and visualize results.

• YouTube
• 36 minutes
• On-Demand
• Free Online Course

Single-Cell Trajectory Analysis Using Monocle3 and Seurat - Step-by-Step Tutorial

. This syllabus covers an intro to trajectory analysis and pseudotime; when, which, and how methods are used; and workflow steps to create a cell_data_set, process, analyze and visualize data.

• YouTube
• 49 minutes
• On-Demand
• Free Online Course

Setup RNA-Seq Pipeline From Scratch - Fastq to Counts - Step-by-Step Tutorial

Learn to process RNA-Seq reads and generate counts matrix in less than an hour with Bioinformagician. The tutorial includes quality control, trimming, alignment, and quantification steps.

• YouTube
• 32 minutes
• On-Demand
• Free Online Course

Bioinformatics and Computational Biology - The Present Gateway to Research

Explore bioinformatics and computational biology with an expert from Bioinformagician, discussing research fields, career paths, job prospects, and graduate work preparation in a 1-2 hour session.

• YouTube
• 1 hour 2 minutes
• On-Demand
• Free Online Course

Pseudo-Bulk Analysis for Single-Cell RNA-Seq Data - Detailed Workflow Tutorial

Bioinformagician's tutorial offers a detailed walk-through of pseudo-bulk differential expression analysis for single-cell RNA-Seq data in R, in under an hour.

• YouTube
• 36 minutes
• On-Demand
• Free Online Course

Find Markers and Cluster Identification in Single-Cell RNA-Seq Using Seurat - Workflow Tutorial

Learn to identify markers in single-cell RNA-Seq using Seurat in R with Bioinformagician's tutorial. Understand study design, data loading, visualization, and differential expression.

• YouTube
• 34 minutes
• On-Demand
• Free Online Course

Integrate Single-Cell RNA-Seq Datasets in R Using Seurat - Detailed Seurat Workflow Tutorial

Learn to merge and correct batch effect in single-cell RNA sequencing datasets using Seurat in R with Bioinformagician's detailed tutorial in under an hour.

• YouTube
• 34 minutes
• On-Demand
• Free Online Course

DESeq2 Basics Explained - Differential Gene Expression Analysis - Bioinformatics 101

Learn to analyze RNA-seq count data and detect differentially expressed genes using DESeq2 in R with Bioinformagician. Less than 1-hour workload.

• YouTube
• 26 minutes
• On-Demand
• Free Online Course

How to Analyze Single-Cell RNA-Seq Data in R - Detailed Seurat Workflow Tutorial

Learn to analyze single-cell RNA sequencing data using the Seurat package in R with Bioinformagician's detailed tutorial. Less than 1-hour workload.

• YouTube
• 36 minutes
• On-Demand
• Free Online Course

Visualize Gene Expression Data in R Using Ggplot2 - Bioinformatics for Beginners

Learn to visualize gene expression data using ggplot2 in R with Bioinformagician. This hands-on tutorial covers barplot, density plot, boxplot, scatterplot, and heatmap creation.

• YouTube
• 37 minutes
• On-Demand
• Free Online Course

How to Manipulate Gene Expression Data from NCBI GEO in R Using Dplyr - Bioinformatics for Beginners

Learn to manipulate gene expression data using R and dplyr in this hands-on tutorial by Bioinformagician. Ideal for beginners, it covers data reading, metadata retrieval, and basic data manipulation.

• YouTube
• 34 minutes
• On-Demand
• Free Online Course

Automatic Cell-Annotation for Single-Cell RNA-Seq Data Using a Reference Dataset - A SingleR Tutorial

Learn to annotate cell types in single-cell RNA-Seq data using SingleR with Bioinformagician. This under 1-hour tutorial covers workflows, strategies, diagnostics, and visualization.

• YouTube
• 34 minutes
• On-Demand
• Free Online Course